Computes the coverage map along the reference genome
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
bam
:file
bam file with the mapping of the reads on the reference genome
*.{.bam}
coverage
*.pkl
Python pickle (pkl) file containing coverage along the reference genome
*.{pkl}
versions_coptr
${task.process}
:string
The name of the process
coptr
The name of the tool
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'
:eval
The expression to obtain the version of the tool
versions
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
