Indexes a directory of fasta files for use with CoPTR
meta{:bash}
:map
Groovy Map containing genome information
indexfasta{:bash}
:file
Fasta file(s) ending in [.fasta, .fna, .fa] to be used to create the index.
*.{.fasta,.fna,.fa}
index_dir{:bash}
bowtie2{:bash}
index genome directory
*.{genome}
versions_coptr{:bash}
${task.process}{:bash}
:string
The name of the process
coptr{:bash}
The name of the tool
coptr |& sed -E '11!d ; s/CoPTR.*?\(v(.*?)\).*/\1/'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing reads.
