modules/crisprcleanr_normalize

remove false positives of functional crispr genomics due to CNVs

sortCNVcorrectionCRISPR

https://github.com/nf-core/modules/[...]/modules/nf-core/crisprcleanr/normalize

Description

remove false positives of functional crispr genomics due to CNVs

Input

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`count_file` (file)

sgRNA raw counts

*.tsv

`library_file` (file)

sgRNA library

*.tsv

Output

Name (Type)

Description

Pattern

`meta` (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

`versions` (file)

File containing software versions

versions.yml

`norm_count_file` (file)

normalized count file

*.tsv

Tools

crisprcleanr
MIT

Analysis of CRISPR functional genomics, remove false positive due to CNVs.

github.com/francescojm/CRISPRcleanR github.com/francescojm/CRISPRcleanR/blob/master/Quick_start.pdf https://github.com/francescojm/CRISPRcleanR/tree/v3.0.0 10.1186/s12864-018-4989-y

modules/crisprcleanr_normalize

Description

Input

`meta` (map)

`count_file` (file)

`library_file` (file)

Output

`meta` (map)

`versions` (file)

`norm_count_file` (file)

included in

maintainer

get in touch

Tools

crisprcleanr
MIT

modules/crisprcleanr_normalize

Description

Input

meta (map)

count_file (file)

library_file (file)

Output

meta (map)

versions (file)

norm_count_file (file)

included in

maintainer

get in touch

Tools

crisprcleanr MIT

`meta` (map)

`count_file` (file)

`library_file` (file)

`meta` (map)

`versions` (file)

`norm_count_file` (file)

crisprcleanr
MIT