Description

Custom module to Add a new fasta file to an old one and update an associated GTF

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing fasta information

meta2 (map)

Groovy Map containing additional fasta information

fasta (file)

FASTA-format sequence file

*.{fasta,fa}

gtf (file)

GTF-format annotation file for fasta

*.gtf

add_fasta (file)

FASTA-format file of additional sequences

*.fa

biotype (string)

Biotype to apply to new GTF entries

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing fasta information

fasta (file)

FASTA-format combined sequence file

*.{fasta,fa}

gtf (file)

GTF-format combined annotation file

*.gtf

versions (file)

File containing software versions

versions.yml

Tools

custom
MIT

Custom module to Add a new fasta file to an old one and update an associated GTF