Description

Generates a FASTA file of chromosome sizes and a fasta index file

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

FASTA file

*.{fa,fasta,fna,fas}

Output

name:type
description
pattern

sizes

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.sizes:file

File containing chromosome lengths

*.{sizes}

fai

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fai:file

FASTA index file

*.{fai}

gzi

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.gzi:file

Optional gzip index file for compressed inputs

*.gzi

versions

versions.yml:file

File containing software versions

versions.yml