Description

Generates a FASTA file of chromosome sizes and a fasta index file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

FASTA file

*.{fa,fasta,fna,fas}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

sizes (file)

File containing chromosome lengths

*.{sizes}

fai (file)

FASTA index file

*.{fai}

gzi (file)

Optional gzip index file for compressed inputs

*.gzi

versions (file)

File containing software versions

versions.yml