Input
Name (Type)
Description
Pattern
Groovy Map containing metadata including an id, the sample sheet column
used to define groups, and optionally a separator to override defaults e.g. [
id:‘test’, variable:‘treatment’, separator:’,’ ]. The way these values are
passed to the associated module parameters is then defined via an ext.args
specification for the process from the workflow, like: ext.args = { [
“separator”: “\t”, “variable”: “$meta.variable” ] } (‘variable’ is
compulsory here).
Output
Name (Type)
Description
Pattern
A categorical class format file (.cls) as defined by the Broad
documentation at
https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats