modules/custom_tabulartogseagct

Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA

gseagcttabular

https://github.com/nf-core/modules/[...]/modules/nf-core/custom/tabulartogseagct

Description

Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA

Input

name:type

description

pattern

`meta:map`

Groovy Map containing matrix information e.g. [ id:‘test’ ]

`tabular:file`

Tabular (e.g. TSV or CSV file) containing a numeric matrix with features (e.g. genes) by row and samples by column.

*.{tsv,csv}

Output

name:type

description

pattern

`gct`

`meta:map`

Groovy Map containing matrix information e.g. [ id:‘test’ ]

`*.gct:file`

GCT format version of input TSV

*.{gct}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

tabulartogseagct

Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA

https://github.com/nf-core/modules/blob/master/modules/nf-core/custom/tabulartogseagct/main.nf