structural-variant calling with cutesv
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bam{:bash}
:file
BAM file
*.bam
bai{:bash}
Index of BAM file
*.bai
meta2{:bash}
Groovy Map containing reference information e.g. [ id:‘fasta’ ]
fasta{:bash}
Reference database in FASTA format
vcf{:bash}
*.vcf{:bash}
VCF file containing called variants from CuteSV
*.vcf
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.
