structural-variant calling with cutesv
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bam
:file
BAM file
*.bam
bai
Index of BAM file
*.bai
meta2
Groovy Map containing reference information e.g. [ id:‘fasta’ ]
fasta
Reference database in FASTA format
vcf
*.vcf
VCF file containing called variants from CuteSV
versions_cutesv
${task.process}
:string
The name of the process
cuteSV
The name of the tool
cuteSV --version 2>&1 | sed 's/cuteSV //'
:eval
The expression to obtain the version of the tool
versions
a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.
