structural-variant calling with cutesv
meta:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bam:file
BAM file
*.bam
bai:file
Index of BAM file
*.bai
meta2:map
Groovy Map containing reference information e.g. [ id:‘fasta’ ]
fasta:file
Reference database in FASTA format
vcf
*.vcf:file
VCF file containing called variants from CuteSV
*.vcf
versions
versions.yml:file
File containing software versions
versions.yml
a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.
