Description

structural-variant calling with cutesv

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

bam (file)

BAM file

*.bam

bai (file)

Index of BAM file

*.bai

meta2 (map)

Groovy Map containing reference information
e.g. [ id:‘fasta’ ]

fasta (file)

Reference database in FASTA format

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

vcf (file)

VCF file containing called variants from CuteSV

*.vcf

versions (file)

File containing software versions

versions.yml
maintainers
Github user christopher-hakkaart
Github user yuukiiwa
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

cutesv
MIT

a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection.

github.com/tjiangHIT/cuteSV github.com/tjiangHIT/cuteSV#readme https://github.com/tjiangHIT/cuteSV