Description

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM/CRAM/SAM file

*.{bam,cram,sam}

fasta (file)

OPTIONAL FASTA reference file

*.{fasta,fna,fa}

fai (file)

OPTIONAL FASTA index file from samtools faidx

*.{fai}

specieslist (file)

OPTIONAL text file with list of target reference headers

*.{txt}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

results (dir)

DamageProfiler results directory

*/*
maintainer
Github user jfy133
get in touch
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