DAS Tool binning step.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
contigs
:file
fasta file
*.{fa.gz,fas.gz,fasta.gz}
bins
FastaToContig2Bin tabular file generated with dastool/fastatocontig2bin
*.tsv
proteins
Predicted proteins in prodigal fasta format (>scaffoldID_geneNo)
db_directory
(optional) Directory of single copy gene database.
log
*.log
Log file of the run
summary
*_summary.tsv
Summary of output bins including quality and completeness estimates
*summary.txt
contig2bin
*_DASTool_contig2bin.tsv
Scaffolds to bin file of output bins
*.contig2bin.txt
eval
*.eval
Quality and completeness estimates of input bin sets
*_DASTool_bins/*.fa
Final refined bins in fasta format
*.fa
pdfs
*.pdf
Plots showing the amount of high quality bins and score distribution of bins per method
candidates_faa
*.candidates.faa
FAA file
fasta_proteins
*_proteins.faa
Output from prodigal if not already supplied
fasta_archaea_scg
*.archaea.scg
Results of archaeal single-copy-gene prediction
fasta_bacteria_scg
*.bacteria.scg
Results of bacterial single-copy-gene prediction
b6
*.b6
Results in b6 format
seqlength
*.seqlength
Summary of contig lengths
versions_dastool
${task.process}
:string
The process the versions were collected from
dastool
The tool name
DAS_Tool --version 2>&1 | grep "DAS Tool" | sed "s/DAS Tool //"
:eval
The expression to obtain the version of the tool
versions
The name of the process
The name of the tool
DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.
