DAS Tool binning step.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
contigs
fasta file
*.{fa.gz,fas.gz,fasta.gz}
bins
FastaToContig2Bin tabular file generated with dastool/fastatocontig2bin
*.tsv
proteins
Predicted proteins in prodigal fasta format (>scaffoldID_geneNo)
db_directory
(optional) Directory of single copy gene database.
version
File containing software version
versions.yml
log
Log file of the run
*.log
summary
Summary of output bins including quality and completeness estimates
*summary.txt
contig2bin
Scaffolds to bin file of output bins
*.contig2bin.txt
eval
Quality and completeness estimates of input bin sets
*.eval
Final refined bins in fasta format
*.fa
pdfs
Plots showing the amount of high quality bins and score distribution of bins per method
*.pdf
fasta_proteins
Output from prodigal if not already supplied
*.proteins.faa
fasta_archaea_scg
Results of archaeal single-copy-gene prediction
*.archaea.scg
fasta_bacteria_scg
Results of bacterial single-copy-gene prediction
*.bacteria.scg
b6
Results in b6 format
*.b6
seqlength
Summary of contig lengths
*.seqlength
DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.
