Description

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Fasta of list of fasta files recommended to be gathered via with .collect() of bins

*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}

extension (val)

Fasta file extension (fa | fas | fasta | …), without .gz suffix, if gzipped input.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

fastatocontig2bin (file)

tabular contig2bin file for DAS tool input

*.tsv
included in
mag
maintainers
Github user maxibor
Github user jfy133
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

dastool
BSD

DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.

github.com/cmks/DAS_Tool 10.1038/s41564-018-0171-1