Description

Helper script to convert a set of bins in fasta format to tabular scaffolds2bin format

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

Fasta or list of fasta files recommended to be gathered via with .collect() of bins

*.{fa,fa.gz,fas,fas.gz,fna,fna.gz,fasta,fasta.gz}

extension:string

Fasta file extension (fa | fas | fasta | …), but without .gz suffix, even if gzipped input.

Output

name:type
description
pattern

scaffolds2bin

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

tabular scaffolds2bin file for DAS tool input

*.scaffolds2bin.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

dastool
BSD

DAS Tool is an automated method that integrates the results of a flexible number of binning algorithms to calculate an optimized, non-redundant set of bins from a single assembly.

github.com/cmks/DAS_Tool 10.1038/s41564-018-0171-1
maintainer
Github user maxibor
get in touch
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