Filter DNA sequences using index of reference genome
meta{:bash}
:map
Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]
index{:bash}
:file
Deacon minimizer index file
*.idx
reads{:bash}
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.{fastq,fastq.gz,fqs,fqs.gz,fq,fq.gz}
fastq_filtered{:bash}
${prefix}*.fq.gz{:bash}
List of output filtered FastQ files of size 1 and 2, for single-end and paired-end data, respectively.
*.fq.gz
log{:bash}
${prefix}.json{:bash}
JSON file containing summary of results.
*.json
versions_deacon{:bash}
${task.process}{:bash}
:string
The name of the process
deacon{:bash}
The name of the tool
deacon --version | head -n1 | sed "s/deacon //g"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Fast alignment-free sequence filter
