Filter DNA sequences using index of reference genome
meta
:map
Groovy Map containing reference information. e.g. [ id:‘test’, single_end:false ]
index
:file
Deacon minimizer index file
*.idx
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.{fastq,fastq.gz,fqs,fqs.gz,fq,fq.gz}
fastq_filtered
${prefix}*.fq.gz
List of output filtered FastQ files of size 1 and 2, for single-end and paired-end data, respectively.
*.fq.gz
log
${prefix}.json
JSON file containing summary of results.
*.json
versions_deacon
${task.process}
:string
The name of the process
deacon
The name of the tool
deacon --version | head -n1 | sed "s/deacon //g"
:eval
The expression to obtain the version of the tool
versions
Fast alignment-free sequence filter
