modules/deeparg_downloaddata

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes

downloaddatabasedeepargantimicrobial resistance genesdeep learningprediction

https://github.com/nf-core/modules/[...]/modules/nf-core/deeparg/downloaddata

Description

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes

Input

No input parameters

Output

name:type

description

pattern

`db`

`db/`
`:directory`

Directory containing database required for deepARG.

db/

`versions_deeparg`

`${task.process}`
`:string`

The name of the process

`deeparg`
`:string`

The name of the tool

`1.0.4`
`:string`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`deeparg`
`:string`

The name of the tool

`1.0.4`
`:string`

The expression to obtain the version of the tool

Tools

deeparg
MIT

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes

github.com/gaarangoa/deeparg 10.1186/s40168-018-0401-z

modules/deeparg_downloaddata

Description

Input

Output

`db`

`db/`
`:directory`

`versions_deeparg`

`${task.process}`
`:string`

`deeparg`
`:string`

`1.0.4`
`:string`

Topics

`versions`

`${task.process}`
`:string`

`deeparg`
`:string`

`1.0.4`
`:string`

Tools

deeparg
MIT

included in

maintainer

get in touch

modules/deeparg_downloaddata

Description

Input

Output

db

db/:directory

versions_deeparg

${task.process}:string

deeparg:string

1.0.4:string

Topics

versions

${task.process}:string

deeparg:string

1.0.4:string

Tools

deeparg MIT

included in

maintainer

get in touch

`db`

`db/`
`:directory`

`versions_deeparg`

`${task.process}`
`:string`

`deeparg`
`:string`

`1.0.4`
`:string`

`versions`

`${task.process}`
`:string`

`deeparg`
`:string`

`1.0.4`
`:string`

deeparg
MIT