modules/deepbgc_download

Database download module for DeepBGC which detects BGCs in bacterial and fungal genomes using deep learning.

databasedownloadBGCbiosynthetic gene clusterdeep learningneural networkrandom forestgenomesbacteriafungi

https://github.com/nf-core/modules/[...]/modules/nf-core/deepbgc/download

Description

Database download module for DeepBGC which detects BGCs in bacterial and fungal genomes using deep learning.

Input

No input parameters

Output

name:type

description

pattern

`db{:bash}`

`deepbgc_db/{:bash}`
`:directory`

Directory containing the DeepBGC database

deepbgc_db/

`versions{:bash}`

`versions.yml{:bash}`
`:file`

File containing software versions

versions.yml

Tools

deepbgc
MIT

DeepBGC - Biosynthetic Gene Cluster detection and classification

github.com/Merck/deepbgc 10.1093/nar/gkz654

modules/deepbgc_download

Description

Input

Output

`db{:bash}`

`deepbgc_db/{:bash}`
`:directory`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

Tools

deepbgc
MIT

included in

maintainer

get in touch

modules/deepbgc_download

Description

Input

Output

db{:bash}

deepbgc_db/{:bash}:directory

versions{:bash}

versions.yml{:bash}:file

Tools

deepbgc MIT

included in

maintainer

get in touch

`db{:bash}`

`deepbgc_db/{:bash}`
`:directory`

`versions{:bash}`

`versions.yml{:bash}`
`:file`

deepbgc
MIT