Description

Deepcell/mesmer segmentation for whole-cell

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

img (file)

Multichannel image file

*.{tiff,tif,h5,hdf5}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

mask (file)

File containing the mask.

*.{tif, tiff}