Deepcell/mesmer segmentation for whole-cell
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
img{:bash}
:file
Multichannel image file
*.{tiff,tif,h5,hdf5}
meta2{:bash}
membrane_img{:bash}
Optional membrane image to be provided separately.
mask{:bash}
*.tif{:bash}
File containing the mask.
*.{tif, tiff}
versions_mesmer{:bash}
${task.process}{:bash}
:string
The name of the process
deepcell_mesmer{:bash}
The name of the tool
0.4.1{:bash}
The expression to obtain the version of the tool
versions{:bash}
Deep cell is a collection of tools to segment imaging data
