Deepcell/mesmer segmentation for whole-cell
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
img:file
Multichannel image file
*.{tiff,tif,h5,hdf5}
meta2:map
membrane_img:file
Optional membrane image to be provided separately.
mask
*.tif:file
File containing the mask.
*.{tif, tiff}
versions
versions.yml:file
File containing software versions
versions.yml
Deep cell is a collection of tools to segment imaging data
