modules/deeptmhmm
A Deep Learning Model for Transmembrane Topology Prediction and Classification
transmembraneproteinclassification
Output
Name (Type)
Description
Pattern
Predicted topologies (inside, outside, TMhelix) in general Feature Format Version 3
biolib_results/TMRs.gff3 Predicted topologies and information of protein sequences in three lines (name, sequence, topology)
biolib_results/predicted_topologies.3line CSV file with per-residue predictions for the likelihood of each amino acid being in structural regions such as Beta-sheet, Periplasm, Membrane, Inside, Outside or Signal (only when querying against genomic fasta)
biolib_results/*_probs.csv Most likely topology probability line plots (only when querying against genomic fasta)
biolib_results/plot.png maintainer
