calculates scores per genome regions for other deeptools plotting utilities
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bigwig
:file
bigwig file containing genomic scores
*.{bw,bigwig}
bed
bed file containing genomic regions
*.{bed}
matrix
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.mat.gz
gzipped matrix file needed by the plotHeatmap and plotProfile deeptools utilities
*.{computeMatrix.mat.gz}
table
*.mat.tab
tabular file containing the scores of the generated matrix
*.{computeMatrix.vals.mat.tab}
versions_deeptools
${task.process}
:string
The name of the process
deeptools
The name of the tool
computeMatrix --version | sed "s/computeMatrix //g"
:eval
The expression to obtain the version of the tool
versions
A set of user-friendly tools for normalization and visualization of deep-sequencing data
