Description

calculates scores per genome regions for other deeptools plotting utilities

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

bigwig (file)

bigwig file containing genomic scores

*.{bw,bigwig}

bed (file)

bed file containing genomic regions

*.{bed}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

matrix (file)

gzipped matrix file needed by the plotHeatmap and plotProfile
deeptools utilities

*.{computeMatrix.mat.gz}

table (file)

tabular file containing the scores of the generated matrix

*.{computeMatrix.vals.mat.tab}

versions (file)

File containing software versions

versions.yml
included in
atacseq chipseq cutandrun
maintainers
Github user jeremy1805
Github user edmundmiller
Github user drpatelh
Github user joseespinosa
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data

deeptools.readthedocs.io/en/develop https://github.com/deeptools/deepTools 10.1093/nar/gku365