Computes read coverage for genomic regions (bins) across the entire genome.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bams
:file
One or more BAM files
*.{bam}
bais
Corresponding BAM file indexes
*.bam.bai
labels
:string
User specified labels instead of default labels (file names).
meta2
Groovy Map containing blacklist metadata e.g. [ id:‘blacklist’ ]
blacklist
BED/GTF file containing regions to exclude from analysis
*.{bed,gtf}
matrix
*.npz
compressed numpy array of read coverage data used by plotCorrelation and plotPCA deeptool utilities
all_bam.bamSummary.npz
versions_deeptools
${task.process}
The name of the process
deeptools
The name of the tool
multiBamSummary --version | sed "s/multiBamSummary //g"
:eval
The expression to obtain the version of the tool
versions
A set of user-friendly tools for normalization and visualization of deep-sequencing data
