modules/deeptools_plotcorrelation

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

corrrelationmatrixheatmapscatterplot

https://github.com/nf-core/modules/[...]/modules/nf-core/deeptools/plotcorrelation

Description

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`matrix:file`

compressed matrix file produced by mutlibamsummary or multibigwigsummary

*.{npz}

`method:string`

Correlation coefficient to use for heatmap or scatterplot generation

{spearman,pearson}

`plot_type:string`

Type of output plot to display sample correlation

{heatmap,scatterplot}

Output

name:type

description

pattern

`pdf`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.pdf:file`

Output figure containing resulting plot

*.{plotCorrelation.pdf}

`matrix`

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

`*.tab:file`

Tab-separated file containing a matrix of pairwise correlations

*.{plotCorrelation.mat.tab}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data

deeptools.readthedocs.io/en/develop https://github.com/deeptools/deepTools 10.1093/nar/gku365

modules/deeptools_plotcorrelation

Description

Input

meta:map

matrix:file

method:string

plot_type:string

Output

pdf

meta:map

*.pdf:file

matrix

meta:map

*.tab:file

versions

versions.yml:file

Tools

deeptools GPL v3

`meta:map`

`matrix:file`

`method:string`

`plot_type:string`

`pdf`

`meta:map`

`*.pdf:file`

`matrix`

`meta:map`

`*.tab:file`

`versions`

`versions.yml:file`

deeptools
GPL v3