Description

plots cumulative reads coverages by BAM file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

bam (file)

One or more BAM files

*.{bam}

bais (file)

Corresponding BAM file indexes

*.bam.bai

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pdf (file)

Output figure containing resulting plot

*.{plotFingerprint.pdf}

matrix (file)

Output file summarizing the read counts per bin

*.{plotFingerprint.raw.txt}

metrics (file)

file containing BAM file quality metrics

*.{qcmetrics.txt}

versions (file)

File containing software versions

versions.yml

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data