plots cumulative reads coverages by BAM file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
bams
:file
BAM files
*.bam
bais
Corresponding BAM file indexes
*.bam.bai
pdf
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.pdf
Output figure containing resulting plot
*.{plotFingerprint.pdf}
matrix
*.raw.txt
Output file summarizing the read counts per bin
*.{plotFingerprint.raw.txt}
metrics
*.qcmetrics.txt
file containing BAM file quality metrics
*.{qcmetrics.txt}
versions_deeptools
${task.process}
:string
The name of the process
deeptools
The name of the tool
plotFingerprint --version | sed "s/plotFingerprint //g"
:eval
The expression to obtain the version of the tool
versions
A set of user-friendly tools for normalization and visualization of deep-sequencing data
