Description

plots values produced by deeptools_computematrix as a heatmap

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

matrix (file)

gzipped matrix file produced by deeptools_
computematrix deeptools utility

*.{mat.gz}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

pdf (file)

Output figure containing resulting plot

*.{plotHeatmap.pdf}

matrix (file)

File containing the matrix of values
used to generate the heatmap

*.{plotHeatmap.mat.tab}

versions (file)

File containing software versions

versions.yml
included in
atacseq chipseq cutandrun
maintainers
Github user edmundmiller
Github user drpatelh
Github user joseespinosa
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data

deeptools.readthedocs.io/en/develop https://github.com/deeptools/deepTools 10.1093/nar/gku365