Description

plots values produced by deeptools_computematrix as a heatmap

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

matrix:file

gzipped matrix file produced by deeptools_ computematrix deeptools utility

*.{mat.gz}

Output

name:type
description
pattern

pdf

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.pdf:file

Output figure containing resulting plot

*.{plotHeatmap.pdf}

table

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tab:file

Output table

versions

versions.yml:file

File containing software versions

versions.yml

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data