plots values produced by deeptools_computematrix as a profile plot
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
matrix{:bash}
:file
gzipped matrix file produced by deeptools_ computematrix deeptools utility
*.{mat.gz}
pdf{:bash}
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
*.pdf{:bash}
Output figure containing resulting plot
*.{plotProfile.pdf}
table{:bash}
*.tab{:bash}
Output table
*.tab
versions_deeptools{:bash}
${task.process}{:bash}
:string
The name of the process
deeptools{:bash}
The name of the tool
plotProfile --version | sed "s/plotProfile //g"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A set of user-friendly tools for normalization and visualization of deep-sequencing data
