Description

plots values produced by deeptools_computematrix as a profile plot

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

matrix{:bash}

:file

gzipped matrix file produced by deeptools_ computematrix deeptools utility

*.{mat.gz}

Output

name:type
description
pattern

pdf{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.pdf{:bash}

:file

Output figure containing resulting plot

*.{plotProfile.pdf}

table{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.tab{:bash}

:file

Output table

*.tab

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

deeptools
GPL v3

A set of user-friendly tools for normalization and visualization of deep-sequencing data