modules/demuxem
Demultiplexing cell nucleus hashing data, using the estimated antibody background probability.
demultiplexinghashing-based deconvoltionsingle-cell
Description
Demultiplexing cell nucleus hashing data, using the estimated antibody background probability.
Input
Name (Type)
Description
Pattern
Path to file containing input raw RNA expression matrix in 10x hdf5 format
pattern: ”*.{h5}”
Path to file containing input HTO (antibody tag) count matrix in CSV format.
*.{csv}
Generate violin plots using gender-specific genes (e.g. Xist). It is a comma-separated list of gene names.
Reference genome name. If not provided, the tools infers it from the expression matrix file