Description

Builds a DIAMOND database

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

fasta:file

Input fasta file

*.{fa,fasta,fa.gz,fasta.gz}

taxonmap:file

Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality.

*.gz

taxonnodes:file

Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality.

*.dmp

taxonnames:file

Optional NCBI taxonomy names.dmp file, required for taxonomy functionality.

*.dmp

Output

name:type
description
pattern

db

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.dmnd:file

File of the indexed DIAMOND database

*.dmnd

versions

versions.yml:file

File containing software versions

versions.yml