Performs fastq alignment to a reference using DRAGMAP
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
meta2
Groovy Map containing reference information e.g. [ id:‘test’, single_end
hashmap
DRAGMAP hash table
Directory containing DRAGMAP hash table *.{cmp,.bin,.txt}
meta3
Groovy Map containing reference information e.g. [ id:‘genome’]
fasta
Genome fasta reference files
*.{fa,fasta,fna}
bam
Output BAM file containing read alignments
*.{bam}
versions
File containing software versions
versions.yml
Dragmap is the Dragen mapper/aligner Open Source Software.
