modules/dragmap_hashtable

Create DRAGEN hashtable for reference genome

indexfastagenomereference

https://github.com/nf-core/modules/[...]/modules/nf-core/dragmap/hashtable

Description

Create DRAGEN hashtable for reference genome

Input

name:type

description

pattern

`meta`
`:map`

Groovy Map containing reference information e.g. [ id:‘test’, single_end:false ]

`fasta`
`:file`

Input genome fasta file

Output

name:type

description

pattern

`hashmap`

`meta`
`:map`

Groovy Map containing reference information e.g. [ id:‘test’, single_end:false ]

`dragmap`
`:string`

DRAGMAP hash table

*.{cmp,.bin,.txt}

`versions_dragmap`

`${task.process}`
`:string`

The name of the process

`dragmap`
`:string`

DRAGMAP hash table

*.{cmp,.bin,.txt}

`dragen-os --version 2>&1`
`:eval`

The expression to obtain the version of the tool

Topics

name:type

description

pattern

`versions`

`${task.process}`
`:string`

The name of the process

`dragmap`
`:string`

DRAGMAP hash table

*.{cmp,.bin,.txt}

`dragen-os --version 2>&1`
`:eval`

The expression to obtain the version of the tool

Tools

dragmap
GPL v3

Dragmap is the Dragen mapper/aligner Open Source Software.

github.com/Illumina/dragmap https://github.com/Illumina/dragmap#basic-command-line-usage

modules/dragmap_hashtable

Description

Input

`meta`
`:map`

`fasta`
`:file`

Output

`hashmap`

`meta`
`:map`

`dragmap`
`:string`

`versions_dragmap`

`${task.process}`
`:string`

`dragmap`
`:string`

`dragen-os --version 2>&1`
`:eval`

Topics

`versions`

`${task.process}`
`:string`

`dragmap`
`:string`

`dragen-os --version 2>&1`
`:eval`

Tools

dragmap
GPL v3

included in

maintainer

get in touch

modules/dragmap_hashtable

Description

Input

meta:map

fasta:file

Output

hashmap

meta:map

dragmap:string

versions_dragmap

${task.process}:string

dragmap:string

dragen-os --version 2>&1:eval

Topics

versions

${task.process}:string

dragmap:string

dragen-os --version 2>&1:eval

Tools

dragmap GPL v3

included in

maintainer

get in touch

`meta`
`:map`

`fasta`
`:file`

`hashmap`

`meta`
`:map`

`dragmap`
`:string`

`versions_dragmap`

`${task.process}`
`:string`

`dragmap`
`:string`

`dragen-os --version 2>&1`
`:eval`

`versions`

`${task.process}`
`:string`

`dragmap`
`:string`

`dragen-os --version 2>&1`
`:eval`

dragmap
GPL v3