Assemble bacterial isolate genomes from Nanopore reads
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
shortreads:file
Optional. List of FastQ files of short reads (paired-end data) that will be used to polish the draft genome.
*.fastq.gz
longreads:file
Input Nanopore FASTQ file
contigs
*.fa:file
The final assembly produced by Dragonflye
*.fa
log
dragonflye.log:file
Full log file for bug reporting
dragonflye.log
raw_contigs
{flye,miniasm,raven}.fasta:file
Raw assembly produced by the assembler (Flye, Miniasm, or Raven)
{flye,miniasm,raven}.fasta
gfa
{flye,miniasm,raven}-unpolished.gfa:file
Assembly graph produced by Miniasm, or Raven
{flye,miniasm,raven}-unpolished.gfa
txt
flye-info.txt:file
Assembly information output by Flye
flye-info.txt
versions
versions.yml:file
File containing software versions
versions.yml
Microbial assembly pipeline for Nanopore reads
