Assemble bacterial isolate genomes from Nanopore reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
shortreads
Optional. List of FastQ files of short reads (paired-end data) that will be used to polish the draft genome.
*.fastq.gz
longreads
Input Nanopore FASTQ file
versions
File containing software versions
versions.yml
contigs
The final assembly produced by Dragonflye
*.fa
log
Full log file for bug reporting
dragonflye.log
raw_contigs
Raw assembly produced by the assembler (Flye, Miniasm, or Raven)
{flye,miniasm,raven}.fasta
txt
Assembly information output by Flye
flye-info.txt
gfa
Assembly graph produced by Miniasm, or Raven
{flye,miniasm,raven}-unpolished.gfa
Microbial assembly pipeline for Nanopore reads
