Description

Assemble bacterial isolate genomes from Nanopore reads

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

Input Nanopore FASTQ file

*.fastq.gz

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

contigs (file)

The final assembly produced by Dragonflye

contigs.fa

log (file)

Full log file for bug reporting

dragonflye.log

raw_contigs (file)

Raw assembly produced by the assembler (Flye, Miniasm, or Raven)

{flye,miniasm,raven}.fasta

txt (file)

Assembly information output by Flye

flye-info.txt

gfa (file)

Assembly graph produced by Miniasm, or Raven

{miniasm,raven}-unpolished.gfa
author
Github user rpetit3
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Tools

dragonflye
GPL v2

Microbial assembly pipeline for Nanopore reads

github.com/rpetit3/dragonflye github.com/rpetit3/dragonflye/blob/main/README.md