Description

Export assembly segment sequences in GFA 1.0 format to FASTA format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gfa (file)

Assembly segments in uncompressed or compressed GFA 1.0 format

*.{gfa|gfa.bgz|gfa.gz|gfa.zst}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

Assembly segment sequences in gzipped FASTA format

*.{fa.gz}

versions (file)

File containing software versions

versions.yml
author
Github user heuermh
get in touch
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Tools

dshbio
LGPL-3.0-or-later

Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later.

github.com/heuermh/dishevelled-bio