Description

Export assembly segment sequences in GFA 1.0 format to FASTA format

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

gfa:file

Assembly segments in uncompressed or compressed GFA 1.0 format

*.{gfa|gfa.bgz|gfa.gz|gfa.zst}

Output

name:type
description
pattern

fasta

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.fa.gz:file

Assembly segment sequences in gzipped FASTA format

*.{fa.gz}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

dshbio
LGPL-3.0-or-later

Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later.