Export assembly segment sequences in GFA 1.0 format to FASTA format
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
gfa
:file
Assembly segments in uncompressed or compressed GFA 1.0 format
*.{gfa|gfa.bgz|gfa.gz|gfa.zst}
Output
name:type
description
pattern
fasta
meta
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
*.fa.gz
:file
Assembly segment sequences in gzipped FASTA format
*.{fa.gz}
versions_dshbio
${task.process}
:string
The name of the process
dsh-bio
:string
The name of the tool
dsh-bio --version | sed '1!d;s/dsh-bio-tools //'
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
dsh-bio
:string
The name of the tool
dsh-bio --version | sed '1!d;s/dsh-bio-tools //'
:eval
The expression to obtain the version of the tool
Tools
dshbio
LGPL-3.0-or-later
Reads, features, variants, assemblies, alignments, genomic range trees, pangenome
graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3
or later.
