Description

Filter features in gzipped BED format

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed

:file

Features in gzipped BED format

*.{bed.gz}

Output

name:type
description
pattern

bed

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bed.gz

:file

Features in gzipped BED format

*.{bed.gz}

versions_dshbio

${task.process}

:string

The name of the process

dsh-bio

:string

The name of the tool

dsh-bio --version | sed '1!d;s/dsh-bio-tools //'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The name of the process

dsh-bio

:string

The name of the tool

dsh-bio --version | sed '1!d;s/dsh-bio-tools //'

:eval

The expression to obtain the version of the tool

Tools

dshbio
LGPL-3.0-or-later

Reads, features, variants, assemblies, alignments, genomic range trees, pangenome graphs, and a bunch of random command line tools for bioinformatics. LGPL version 3 or later.