In silico prediction of E. coli serotype
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
FASTA formatted assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
log{:bash}
*.log{:bash}
ectyper log output
*.log
tsv{:bash}
*.tsv{:bash}
ectyper serotyping results in TSV format
*.tsv
txt{:bash}
*.txt{:bash}
Allele report generated from BLAST results
*.tst
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
ECtyper is a python program for serotyping E. coli genomes
