In silico prediction of E. coli serotype
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta:file
FASTA formatted assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
log
*.log:file
ectyper log output
*.log
tsv
*.tsv:file
ectyper serotyping results in TSV format
*.tsv
txt
*.txt:file
Allele report generated from BLAST results
*.tst
versions
versions.yml:file
File containing software versions
versions.yml
ECtyper is a python program for serotyping E. coli genomes
