Fast genome-wide functional annotation through orthology assignment.
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta:file
Database of sequences in FASTA format
*.{fasta,fa,fasta.gz,fa.gz}
eggnog_db:file
The eggnog database file (e.g. eggnog-mapper/data/eggnog.db)
*.db
eggnog_data_dir:directory
Directory containing eggnog database files (e.g. eggnog-mapper/data)
*
meta2:map
Groovy Map containing database information e.g. [ id:'test' ]
[ id:'test' ]
eggnog_diamond_db:file
The eggnog Diamond protein database file (e.g. eggnog-mapper/data/eggnog_proteins.dmnd)
*.dmnd
annotations
*.emapper.annotations:file
TSV with the results from the annotation phase
*.emapper.annotations
orthologs
*.emapper.seed_orthologs:file
TSV with the results from parsing the hits, linking queries with seed orthologs (with commented metadata)
*.emapper.seed_orthologs
hits
*.emapper.hits:file
TSV with the results from the Diamond search phase
*.emapper.hits
versions
versions.yml:file
File containing software versions
versions.yml
