Fast genome-wide functional annotation through orthology assignment.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta{:bash}
:file
Database of sequences in FASTA format
*.{fasta,fa,fasta.gz,fa.gz}
eggnog_db{:bash}
The eggnog database file (e.g. eggnog-mapper/data/eggnog.db)
*.db
eggnog_data_dir{:bash}
:directory
Directory containing eggnog database files (e.g. eggnog-mapper/data)
*
meta2{:bash}
Groovy Map containing database information e.g. [ id:'test' ]
[ id:'test' ]
eggnog_diamond_db{:bash}
The eggnog Diamond protein database file (e.g. eggnog-mapper/data/eggnog_proteins.dmnd)
*.dmnd
annotations{:bash}
*.emapper.annotations{:bash}
TSV with the results from the annotation phase
*.emapper.annotations
orthologs{:bash}
*.emapper.seed_orthologs{:bash}
TSV with the results from parsing the hits, linking queries with seed orthologs (with commented metadata)
*.emapper.seed_orthologs
hits{:bash}
*.emapper.hits{:bash}
TSV with the results from the Diamond search phase
*.emapper.hits
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
