Description

Fast genome-wide functional annotation through orthology assignment.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

fasta (file)

Database of sequences in FASTA format

*.{fasta,fa,fasta.gz,fa.gz}

eggnog_db (file)

The eggnog database file (e.g. eggnog-mapper/data/eggnog.db)

*.db

eggnog_data_dir (directory)

Directory containing eggnog database files (e.g. eggnog-mapper/data)

*

eggnog_diamond_db (file)

The eggnog Diamond protein database file (e.g. eggnog-mapper/data/eggnog_proteins.dmnd)

*.dmnd

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

annotations (file)

TSV with the results from the annotation phase

*.emapper.annotations

orthologs (file)

TSV with the results from parsing the hits, linking queries with seed orthologs (with commented metadata)

*.emapper.seed_orthologs

hits (file)

TSV with the results from the Diamond search phase

*.emapper.hits

versions (file)

File containing software versions

versions.yml