Convert any PEP project or Nextflow samplesheet to any format
Input
name:type
description
pattern
samplesheet:file
Nextflow samplesheet or PEP project
*.{yaml,yml,csv}
format:string
Extension of an output file
pep_input_base_dir:file
Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.
Output
name:type
description
pattern
versions
versions.yml:file
File containing software versions
versions.yml
samplesheet_converted
${prefix}.${format}:file
PEP project or samplesheet converted to csv file
Tools
eido
BSD-2-Clause
Convert any PEP project or Nextflow samplesheet to any format
