Description

Convert any PEP project or Nextflow samplesheet to any format

Input

Name (Type)
Description
Pattern

samplesheet (file)

Nextflow samplesheet or PEP project

*.{yaml,yml,csv}

format (string)

Extension of an output file

pep_input_base_dir (file)

Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

samplesheet_converted (file)

PEP project or samplesheet converted to csv file

Tools

eido
BSD-2-Clause

Convert any PEP project or Nextflow samplesheet to any format