Description

Validate samplesheet or PEP config against a schema

Input

Name (Type)
Description
Pattern

samplesheet (file)

Samplesheet or PEP file to be validated

*.{yaml,yml,csv}

schema (file)

Schema that the samplesheet will be validated against

*.{yaml,yml}

pep_input_base_dir (file)

Optional path to the directory where files specified in a PEP config file are stored. Any paths specified in the config will need to be relative to this base directory.

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

log (file)

File containing validation log.

*.log

Tools

validate
BSD-2-Clause

Validate samplesheet or PEP config against a schema.