tool for detection and quantification of large mtDNA rearrangements.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
MT BAM/SAM file
*.{bam,sam}
bai
MT BAM/SAM index file
*.{bai,sai}
ref_gb
mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used
*.{gb}
csv
csv file containing deletions
*.{csv}
circos
png file with circos plot of mt
*.{png}
versions
File containing software versions
versions.yml