Description

tool for detection and quantification of large mtDNA rearrangements.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

MT BAM/SAM file

*.{bam,sam}

bai (file)

MT BAM/SAM index file

*.{bai,sai}

ref_gb (file)

mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used

*.{gb}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

csv (file)

csv file containing deletions

*.{csv}

circos (file)

png file with circos plot of mt

*.{png}

versions (file)

File containing software versions

versions.yml
included in
raredisease
author
Github user Lucpen
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Tools

eklipse
GNU General Public v3 or later (GPL v3+)

tool for detection and quantification of large mtDNA rearrangements.

github.com/dooguypapua/eKLIPse/tree/master 10.1038/s41436-018-0350-8