tool for detection and quantification of large mtDNA rearrangements.
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam
:file
MT BAM/SAM file
*.{bam,sam}
bai
MT BAM/SAM index file
*.{bai,sai}
ref_gb
mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used
*.{gb}
deletions
*deletions.csv
csv file with deletion information
genes
*genes.csv
csv file with gene information
circos
*.png
png file with circos plot of mt
*.{png}
versions_eklipse
${task.process}
:string
The name of the process
eklipse
The name of the tool
eKLIPse.py 2>&1 | sed -n 's/.*\[v\([^]]*\)\].*/\1/p' | tr '-' '.'
:eval
The expression to obtain the version of the tool
versions
