tool for detection and quantification of large mtDNA rearrangements.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bam:file
MT BAM/SAM file
*.{bam,sam}
bai:file
MT BAM/SAM index file
*.{bai,sai}
ref_gb:file
mtDNA reference genome in Genbank format, optional if empty NC_012920.1.gb will be used
*.{gb}
deletions
*deletions.csv:file
csv file with deletion information
*deletions.csv
genes
*genes.csv:file
csv file with gene information
*genes.csv
circos
*.png:file
png file with circos plot of mt
*.{png}
versions
versions.yml:file
File containing software versions
versions.yml
