Merge split bam/sam chunks in one file
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
List of BAM/SAM chunks to merge
File containing software versions
Merged BAM/SAM file
elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.