Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
bam:file
List of BAM/SAM chunks to merge
*.{bam,sam}
Output
name:type
description
pattern
bam
meta:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
]
output/**.{bam,sam}:file
Merged BAM/SAM file
*.{bam,sam}
versions
versions.yml:file
File containing software versions
versions.yml
Tools
elprep
AGPL v3
elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.
