Split bam file into manageable chunks
Groovy Map containing sample information
e.g. [ id:‘test’, single_end
List of BAM/SAM files
File containing software versions
List of split BAM/SAM files
elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.