Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
bam{:bash}
:file
List of BAM/SAM files
*.{bam,sam}
Output
name:type
description
pattern
bam{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
output/**.{bam,sam}{:bash}
:file
List of split BAM/SAM files
*.{bam,sam}
versions{:bash}
versions.yml{:bash}
:file
File containing software versions
versions.yml
Tools
elprep
AGPL v3
elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.
