Description

Split bam file into manageable chunks

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

List of BAM/SAM files

*.{bam,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

bam (file)

List of split BAM/SAM files

*.{bam,sam}
maintainer
Github user matthdsm
get in touch
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Tools

elprep
AGPL v3

elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4.

github.com/ExaScience/elprep 10.1371/journal.pone.0244471