Description

cons calculates a consensus sequence from a multiple sequence alignment. To obtain the consensus, the sequence weights and a scoring matrix are used to calculate a score for each amino acid residue or nucleotide at each position in the alignment.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

Multiple sequence alignment (unzipped)

*.{fasta,fa,fas,fsa,seq,mpfa,aln,clustal,clw,msf,phy,phylip,stockholm,sto,msf,afa,afa,a}

Output

name:type
description
pattern

consensus

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.fa:file

Consensus sequence calculated from multiple sequence alignment

*.fa

versions

versions.yml:file

File containing software versions

versions.yml