EMM typing of Streptococcus pyogenes assemblies
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
FASTA assembly file
*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}
tsv
*.tsv
Tab-delimited result file
versions_emmtyper
${task.process}
:string
The name of the process
emmtyper
The name of the tool
python -c "import emmtyper; print(emmtyper.__version__)"
:eval
The expression to obtain the version of the tool
versions
Streptococcus pyogenes in silico EMM typer
