Description

EMM typing of Streptococcus pyogenes assemblies

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

FASTA assembly file

*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

Tab-delimited result file

*.tsv

versions

versions.yml:file

File containing software versions

versions.yml

Tools

emmtyper
GNU General Public v3 (GPL v3)

Streptococcus pyogenes in silico EMM typer