modules/endorspy
endorS.py calculates endogenous DNA from samtools flagstat files and print to screen
endogenous DNAancient DNApercent on targetstatistics
Input
Name (Type)
Description
Pattern
output of samtools flagstat in a txt file, assumes no quality filtering nor duplicate removal performed
output of samtools flagstat in a txt file, assumes some form of quality or length filtering has been performed, must be provided with at least one of the options -r or -d