Description

Ensembl Variant Effect Predictor (VEP). The cache downloading options are controlled through task.ext.args.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

assembly (string)

Genome assembly

species (string)

Specie

cache_version (string)

cache version

Output

Name (Type)
Description
Pattern

cache (file)

cache

*

versions (file)

File containing software versions

versions.yml
included in
rnadnavar sarek
author
Github user maxulysse
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Tools

ensemblvep
Apache-2.0

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

ensembl.org/info/docs/tools/vep ensembl.org/info/docs/tools/vep/script