Description

Ensembl Variant Effect Predictor (VEP). The cache downloading options are controlled through task.ext.args.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

assembly:string

Genome assembly

species:string

Specie

cache_version:string

cache version

Output

name:type
description
pattern

cache

meta:file

cache

*

prefix:file

cache

*

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ensemblvep
Apache-2.0

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

ensembl.org/info/docs/tools/vep ensembl.org/info/docs/tools/vep/script
rnadnavar rnavar sarek tumourevo
Github user maxulysse
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