Filter variants based on Ensembl Variant Effect Predictor (VEP) annotations.
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
input
VCF/TAB file annotated with vep
*.{vcf,tab,tsv,txt}
feature_file
File containing features on separate lines. To be used with —filter option.
versions
File containing software versions
versions.yml
output
VCF/TAB file
*.{vcf,tab,txt,tsv}
VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.
