estimation of the unfolded site frequency spectrum
Input
name:type
description
pattern
meta
:map
Groovy Map containing sample information
e.g. [ id:'test']
e_config
:file
config file for est-sfs
*.txt
data
:file
input data file for est-sfs
*.txt
seed
:file
text file containing random number seed
*.txt
Output
name:type
description
pattern
sfs_out
meta
:map
Groovy Map containing sample information
e.g. [ id:'test']
${prefix}_sfs.txt
:file
output file consists of the comma-separated estimated uSFS vector
*.txt
pvalues_out
meta
:map
Groovy Map containing sample information
e.g. [ id:'test']
${prefix}_pvalues.txt
:file
this file contains the estimated ancestral state probabilities for each site
*.txt
versions_estsfs
${task.process}
:string
The name of the process
est-sfs
:string
The name of the tool
2.04
:string
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions
${task.process}
:string
The name of the process
est-sfs
:string
The name of the tool
2.04
:string
The expression to obtain the version of the tool
Tools
estsfs
Free for Academic Use
est-sfs ( Keightley and Jackson, 2018) is a stand-alone implementation of a method to infer the unfolded site frequency spectrum (the uSFS) and ancestral state probabilities by maximum likelihood (ML).
