Description

Run falco on sequenced reads

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

reads (file)

List of input FastQ files of size 1 and 2 for single-end and paired-end data,
respectively.

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

html (file)

FastQC like report

*_{fastqc_report.html}

txt (file)

falco report data

*_{data.txt}

txt (file)

falco summary file

*_{summary.txt}

versions (file)

File containing software versions

versions.yml

Tools

fastqc
GPL v3

falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.