Description

Run falco on sequenced reads

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.

Output

name:type
description
pattern

html

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.html:file

FastQC like report

*_{fastqc_report.html}

txt

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.txt:file

falco report data

*_{data.txt}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

fastqc
GPL v3

falco is a drop-in C++ implementation of FastQC to assess the quality of sequence reads.