Description

Aligns sequences using FAMSA

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test']

fasta (file)

Input sequences in FASTA format

*.{fa,fasta}

meta2 (map)

Groovy Map containing tree information
e.g. [ id:'test_tree']

tree (file)

Input guide tree in Newick format

*.{dnd}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test']

alignment (file)

Alignment file.

*.{aln}

versions (file)

File containing software versions

versions.yml
included in
multiplesequencealign
author
Github user luisas
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Tools

famsa
GPL v3

Algorithm for large-scale multiple sequence alignments

github.com/refresh-bio/FAMSA 10.1038/srep33964