Groovy Map containing sample information
e.g. [ id:'test']
fasta (file)
Input sequences in FASTA format
*.{fa,fasta}
meta2 (map)
Groovy Map containing tree information
e.g. [ id:'test_tree']
tree (file)
Input guide tree in Newick format
*.{dnd}
compress (boolean)
Flag representing whether the output MSA should be compressed. Set to true to enable/false to disable compression. Compression is handled by passing ‘-gz’ to FAMSA along with any other options specified in task.ext.args.
Output
Name (Type)
Description
Pattern
meta (map)
Groovy Map containing sample information
e.g. [ id:'test']
alignment (file)
Alignment file, in FASTA format. May be gzipped or uncompressed, depending on if compress is set to true or false
