Description

Renders a guidetree in famsa

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'test']

fasta

:file

Input sequences in FASTA format

*.{fa,fasta}

Output

name:type
description
pattern

tree

meta

:map

Groovy Map containing sample information e.g. [ id:'test']

*.dnd

:file

Guide tree file in Newick format

*.{dnd}

versions_famsa

${task.process}

:string

The process the versions were collected from

famsa

:string

The tool name

famsa -help 2>&1 | sed '2!d;s/.*version //;s/ .*//'

:eval

The expression to obtain the version of the tool

Topics

name:type
description
pattern

versions

${task.process}

:string

The process the versions were collected from

famsa

:string

The tool name

famsa -help 2>&1 | sed '2!d;s/.*version //;s/ .*//'

:eval

The expression to obtain the version of the tool

Tools

famsa
GPL v3

Algorithm for large-scale multiple sequence alignments